I think that what you may need here is a jagged array. A jagged array is an array of arrays.
string fileName = @"C:\temp\myfile.txt";
string[] lines = File.ReadAllLines(fileName);
int[][] jaggedArray = new int[lines.Length][];
for (int i = 0; i < lines.Length; i++)
{
string[] strArray = lines[i].Split(',');
int[] intArray = Array.ConvertAll(strArray, int.Parse);
jaggedArray[i] = intArray;
}
string result = string.Join(", ", jaggedArray[0]);
Console.WriteLine(result);